duplex operation【通信】;duplex running【通信】 - PMC

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Select item 66268331.

Structural Flexibility of DNA-RNA Hybrid Duplex: Stretching and Twist-Stretch Coupling

Ju-Hui Liu, Kun Xi, Xi Zhang, Lei Bao, Xinghua Zhang, Zhi-Jie Tan

Biophys J. 2019 Jul 9; 117(1): 74–86. Published online 2019 May 23. doi: 10.1016/j.bpj.2019.05.018

PMCID:: PMC6626833

Article PDF–2.6M

Select item 103621452.

Monitoring RNA restructuring in a human cell-free extract reveals eIF4A-dependent and eIF4A-independent unwinding activity

Mattie H. O'Sullivan, Christopher S. Fraser

J Biol Chem. 2023 Jul; 299(7): 104936. Published online 2023 Jun 17. doi: 10.1016/j.jbc.2023.104936

PMCID:: PMC10362145

Article PDF–1.2M

Select item 95088413.

The molecular mechanism of microRNA duplex selectivity of Arabidopsis ARGONAUTE10

Yao Xiao, Ian J MacRae

Nucleic Acids Res. 2022 Sep 23; 50(17): 10041–10052. Published online 2022 Jul 8. doi: 10.1093/nar/gkac571

PMCID:: PMC9508841

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Select item 104019654.

Molecular insight into how the position of an abasic site and its sequence environment influence DNA duplex stability and dynamics

Brennan Ashwood, Michael S. Jones, Yumin Lee, Joseph R. Sachleben, Andrew L. Ferguson, Andrei Tokmakoff

Version 1. bioRxiv. Preprint. 2023 Jul 25. doi: 10.1101/2023.07.22.550182

Published in:: Biophys J. 2024 Jan 16; 123(2): 118–133.

PMCID:: PMC10401965

Article PDF–1.9M

Select item 99769035.

Structure of a 28.5 kDa duplex-embedded G-quadruplex system resolved to 7.4 Å resolution with cryo-EM

Robert C Monsen, Eugene Y D Chua, Jesse B Hopkins, Jonathan B Chaires, John O Trent

Nucleic Acids Res. 2023 Feb 28; 51(4): 1943–1959. Published online 2023 Jan 30. doi: 10.1093/nar/gkad014

Correction in:: Nucleic Acids Res. 2023 Apr 24; 51(7): 3497.

PMCID:: PMC9976903

Article PDF–6.6M

Select item 106807056.

The unusual structural properties and potential biological relevance of switchback DNA

Bharath Raj Madhanagopal, Hannah Talbot, Arlin Rodriguez, Jiss Maria Louis, Hana Zeghal, Sweta Vangaveti, Kaalak Reddy, Arun Richard Chandrasekaran

Version 2. bioRxiv. Preprint. 2023 Nov 17 [revised 2024 Apr 12]. doi: 10.1101/2023.11.15.563609

PMCID:: PMC10680705

Article PDF–4.8M

Select item 57372847.

Influence of nucleotide modifications at the C2’ position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA

William Copp, Alexey Y. Denisov, Jingwei Xie, Anne M. Noronha, Christopher Liczner, Nozhat Safaee, Christopher J. Wilds, Kalle Gehring

Nucleic Acids Res. 2017 Sep 29; 45(17): 10321–10331. Published online 2017 Aug 18. doi: 10.1093/nar/gkx713

PMCID:: PMC5737284

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Select item 93971388.

Monitoring helicase-catalyzed unwinding of multiple duplexes simultaneously

Matthew D. Thompson, Emory Malone, Alicia Byrd

Methods Enzymol. Author manuscript; available in PMC 2023 Mar 25.

Published in final edited form as: Methods Enzymol. 2022; 672: 1–27. Published online 2022 Mar 25. doi: 10.1016/bs.mie.2022.02.018

PMCID:: PMC9397138

Article PDF–713K

Select item 82879259.

Triplex-forming properties and enzymatic incorporation of a base-modified nucleotide capable of duplex DNA recognition at neutral pH

David A Rusling

Nucleic Acids Res. 2021 Jul 21; 49(13): 7256–7266. Published online 2021 Jul 7. doi: 10.1093/nar/gkab572

PMCID:: PMC8287925

Article PDF–2.1M

Select item 989413010.

SV40 T-antigen uses a DNA shearing mechanism to initiate origin unwinding

Lance D. Langston, Zuanning Yuan, Roxana Georgescu, Huilin Li, Michael E. O’Donnell

Proc Natl Acad Sci U S A. 2022 Dec 6; 119(49): e2216240119. Published online 2022 Nov 28. doi: 10.1073/pnas.2216240119

PMCID:: PMC9894130

Article PDF–3.0M

Select item 1080491811.

Selective Inhibition of ADAR1 using 8-Azanebularine-modified RNA Duplexes

Herra G. Mendoza, Victorio Jauregui Matos, SeHee Park, Kevin M. Pham, Peter A. Beal

Biochemistry. Author manuscript; available in PMC 2024 Jan 23.

Published in final edited form as: Biochemistry. 2023 Apr 18; 62(8): 1376–1387. Published online 2023 Mar 27. doi: 10.1021/acs.biochem.2c00686

PMCID:: PMC10804918

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Select item 660983612.

Accurate and Efficient Mapping of the Cross-Linked microRNA-mRNA Duplex Reads

Cuncong Zhong, Shaojie Zhang

iScience. 2019 Aug 30; 18: 11–19. Published online 2019 May 29. doi: 10.1016/j.isci.2019.05.038

PMCID:: PMC6609836

Article PDF–3.2M

Select item 1021445713.

Photocleavable Ortho-Nitrobenzyl-Protected DNA Architectures and Their Applications

Michael P. O’Hagan, Zhijuan Duan, Fujian Huang, Shay Laps, Jiantong Dong, Fan Xia, Itamar Willner

Chem Rev. 2023 May 24; 123(10): 6839–6887. Published online 2023 Apr 20. doi: 10.1021/acs.chemrev.3c00016

PMCID:: PMC10214457

Article PDF–29M

Select item 918706714.

A qPCR-duplex assay for sex determination in ancient DNA

Anna Poma, Patrizia Cesare, Antonella Bonfigli, Anna Rita Volpe, Sabrina Colafarina, Giulia Vecchiotti, Alfonso Forgione, Osvaldo Zarivi

PLoS One. 2022; 17(6): e0269913. Published online 2022 Jun 10. doi: 10.1371/journal.pone.0269913

PMCID:: PMC9187067

Article PDF–2.8M

Select item 1096273215.

Gapless assembly of complete human and plant chromosomes using only nanopore sequencing

Sergey Koren, Zhigui Bao, Andrea Guarracino, Shujun Ou, Sara Goodwin, Katharine M. Jenike, Julian Lucas, Brandy McNulty, Jimin Park, Mikko Rautiainen, Arang Rhie, Dick Roelofs, Harrie Schneiders, Ilse Vrijenhoek, Koen Nijbroek, Doreen Ware, Michael C. Schatz, Erik Garrison, Sanwen Huang, W. Richard McCombie, Karen H. Miga, Alexander H.J. Wittenberg, Adam M. Phillippy

Version 2. bioRxiv. Preprint. 2024 Mar 19. doi: 10.1101/2024.03.15.585294